Eurycea wrote:So you are saying just add drought as a categorical variable in the model, such as the dipper flood example, right? Hmmm. yeah that probably makes more sense, doesn't it? Thanks.
If you read chapter 6, you will see there are at least a couple of ways to handle this -- in MARK. But, the question of categorical or continuous covariate is something *you* need to think about -- the flood example presumes that a given year can be categorized as either flood or non-flood; i.e., two levels of a factor by which each year is classified (so, single classification level ANOVA with 2 levels of the classification factor). If you believe that any drought year is the same as any other drought year, such that you simply dichotomize between drought and non-drought (making the similarity with the flood, non-flood dipper example very obvious), then what you do next is straightforward. If you think there are interesting temporal relationships mediated by whether or not there is a drought, you'd do other things.
From the sounds of it, you're best advised to pretend your organism is a dipper, and simply substitute 'drought' for 'flood'.