"Number of unique encounter histories read was 321."

But I have 4295 encounter histories, which is correctly reflected when I use the MARK GUI.

Within R, both the input data and processed data report the correct dimensions when using the functions convert.inp and process.data.

The model specification doesn't really seem to matter; I tried a bunch of stuff. Robust design models with similar data seem to run just fine, but once I do the Multistrata type, I get this problem.

I've looked through the help a few times and I just cannot figure out what I am doing wrong, if anything. The example in the appendix of the Gentle Intro runs fine. I've tried changing the coding of my strata (there are only two states). I'm using the same input file as I use in the MARK GUI. Just not sure what is happening here. Please help.

Here's an example of a call to run a model.

- Code: Select all
`run.mstrata3=function()`

{

ms.dp <- process.data(df,model="Multistrata")

ms.ddl <- make.design.data(ms.dp)

#create formula

Psi.stratum = list(formula =~-1+stratum:tostratum,link = "logit")

p.stratum=list(formula=~stratum)

S.stratum=list(formula=~stratum)

model.list=create.model.list("Multistrata")

mstrata.results=mark.wrapper(model.list,data=ms.dp,ddl=ms.ddl)

return(mstrata.results)

}

ms.results3 = run.mstrata3()